PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092749001
Common NameGSBRNA2T00092749001, LOC106357301
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 346aa    MW: 38329.9 Da    PI: 6.7887
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092749001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702225.21.3e-691142812154
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel..........k 79 
                          r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s+   +a++kr re           +
  GSBRNA2T00092749001 114 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRetPNANAKRLREVdggdndddkdH 203
                          7899*******************************************************9999988663344444444456666655444 PP

               DUF702  80 skkqsalsstklssaeskkelet.sslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                          +    ++ +t++++++s++ le+ ++lP+evss+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG+++
  GSBRNA2T00092749001 204 NGGGGSSLATRVVNTNSNSGLEAiQKLPPEVSSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 281
                          55667788888899888888775167*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-64117280IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.1E-28119161IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.8E-26230279IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNSKQDHH QVDKDHHHHQ DKSNYLYLYK DEIYNTNKGF EIWPPQYFQQ  60
QQEQQQHVTP PSNFYSFGMV PSGSSSGNNN NNRSRGLYFN VVSDHEPGGF TVTRQGGMNC  120
QDCGNQAKKD CPHMRCRTCC KSRGFHCQTH VKSTWVPAAK RRERLAQLAS LQHHSASSRE  180
TPNANAKRLR EVDGGDNDDD KDHNGGGGSS LATRVVNTNS NSGLEAIQKL PPEVSSPAVF  240
RCVRVSSIEE DEDDQEYAYQ TAVNIGGHVF KGILYDQGPD QDHHHQFNLL ASTATTTNAE  300
EIAAKTAVTI AGNNNSGLIL DPSSLYPTQL NSFIAGTPFF TPPRD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.292011e-147bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652439.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A078JW900.0A0A078JW90_BRANA; BnaAnng31570D protein
TrEMBLD2KC760.0D2KC76_BRARP; Short internode related sequence 5
STRINGBra015837.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-157SHI-related sequence 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]